Description
Book SynopsisExploring the Archaeal Virosphere by Metagenomics.- From Whole-Genome Shotgun Sequencing to Viral Community Profiling: The ViromeScan Tool.- Freshwater Viral Metagenome Analyses Targeting dsDNA Viruses.- Discovery and Identification of Viruses Infecting Oomycetes.- Metagenomic Analyses of Viruses in the Orchid Mycorrhizal Interaction using Improved Assemble Tools.- Determination of the Mycovirome of a Necrotrophic Fungus.- From Metagenomics to Ecogenomics: NGS-Based Approaches for Discovery of New Circular DNA Single-Stranded Viral Species.- SARS-CoV-2 Detection and Genome Sequencing in Urban Wastewaters.- Enrichment, Sequencing, and Identification of DNA Bacteriophages from Fecal Samples.- Exploration and Retrieval of Virus-Related Molecular Data using ExTaxsI: The Monkeypox Use Case.- Optimized Recovery of Viral DNA and RNA from Blood Plasma for Viral Metagenomics.- Targeted Whole Genome Sequencing of the Capripoxvirus Genom
Table of Contents
Preface…Table of Contents…Contributing Authors…
1. Exploring the Archaeal Virosphere by MetagenomicsYifan Zhou, Yongjie Wang, David Prangishvili, and Mart Krupovic
2. From Whole-Genome Shotgun Sequencing to Viral Community Profiling: The ViromeScan ToolSimone Rampelli, Silvia Turroni, and Marco Candela
3. Freshwater Viral Metagenome Analyses Targeting dsDNA VirusesKira Moon and Jang-Choen Cho
4. Discovery and Identification of Viruses Infecting OomycetesAnna Poimala and Eeva J. Vainio
5. Metagenomic Analyses of Viruses in the Orchid Mycorrhizal Interaction using Improved Assemble ToolsKota Kambara, Hanako Shimura, Kaien Fujino, and Chikara Masuta
6. Determination of the Mycovirome of a Necrotrophic FungusAna Ruiz-Padilla, Julio L. Rodríguez-Romero, Davide Pacifico, and María A. Ayllón
7. From Metagenomics to Ecogenomics: NGS-Based Approaches for Discovery of New Circular DNA Single-Stranded Viral SpeciesEnrique A. Guevara-Rivera, Edgar A. Rodríguez-Negrete, Rosa Lozano-Durán, Eduardo R. Bejarano, Alan M. Torres-Calderón, Ángela P. Arce-Leal, Norma E. Leyva-López, and Jesús Méndez-Lozano
8. SARS-CoV-2 Detection and Genome Sequencing in Urban WastewatersEnric Cuevas-Ferrando, Gloria Sánchez, and Alba Pérez-Cataluña
9. Enrichment, Sequencing, and Identification of DNA Bacteriophages from Fecal SamplesQuentin Lamy-Besnier and Julian R. Garneau
10. Exploration and Retrieval of Virus-Related Molecular Data using ExTaxsI: The Monkeypox Use CaseAlberto Brusati, Giulia Agostinetto, Antonia Bruno, Maurizio Casiraghi, Dario Pescini, Anna Sandionigi, and Bachir Balech
11. Optimized Recovery of Viral DNA and RNA from Blood Plasma for Viral MetagenomicsMaría Cebriá-Mendoza, Wladimiro Díaz, Rafael Sanjuán, and José M. Cuevas
12. Targeted Whole Genome Sequencing of the Capripoxvirus Genome from Clinical Tissue Samples and Lyophilized Vaccine BatchesElisabeth Mathijs and Frank Vandenbussche
13. Viromes of Plants Determined by High-Throughput Sequencing of Virus Derived siRNAsNikoletta Jaska-Czotter, Zsuzanna Nagyne-Galbacs, Almash Jahan, Emese Demian, and Éva Várallyay
14. Validation of High-Throughput Sequencing (HTS) for Routine Detection of Citrus Viruses and ViroidsRachelle Bester and Hans J. Maree
15. Identification of DNA Viruses in Ancient DNA from Herbarium SamplesGianluca Grasso, Silvia Rotunno, Régis Debruyne, Lucie Bittner, Laura Miozzi, Roland Marmesse, and Valeria Bianciotto
16. The Oxford Nanopore MinION as a Versatile Technology for the Diagnosis and Characterization of Emerging Plant VirusesGiulia Tarquini, Simone Maestri, Paolo Ermacora, and Marta Martini
17. Detection of Plant Viruses using Nanopore Sequencing Based Metagenomic ApproachAnja Pecman, Nataša Mehle and Denis Kutnjak
18. Application of Nanopore-Based Sequencing to Identify Virus Infections in Woody PlantsSerafina Serena Amoia, Michela Chiumenti, and Angelantonio Minafra
19. Distribution of Small RNAs Along Transposable Elements in Vitis vinifera during Somatic EmbryogenesisSilvia Rotunno, Paola Leonetti, Gyorgy Szittya, and Vitantonio Pantaleo
Subject Index List…
