Description



Table of Contents

Crumple: An Efficient Tool to Explore thoroughly the RNA Folding Landscape.- Secondary Structure Prediction of Single Sequences using RNAstructure.- Prediction of Secondary Structures Conserved in Multiple RNA Sequences.- Predicting RNA-RNA Interactions Using RNAstructure.- A Method to Predict the Structure and Stability of RNA/RNA Complexes.- STarMir Tools for Prediction of microRNA Binding Sites.- Traditional Chemical Mapping of RNA Structure in vitro and in vivo.- High-throughput Nuclease Probing of RNA Structures using FragSeq.- Mapping RNA Structure in vitro with SHAPE Chemistry and Next Generation Sequencing (SHAPE-Seq).- Experiment-assisted Secondary Structure Prediction with RNAstructure.- RNA Secondary Structure Determination by NMR.- Modeling Small Non-canonical RNA Motifs with the Rosetta FARFAR Server.- Automated RNA 3D Structure Prediction with RNAComposer.- RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS.- Exploring Alternative RNA Structure Sets using MC-FLashfold and db2cm.- NMR Methods for Characterization of RNA Secondary Structure.- The Quick and the Dead: A Guide to Fast Phasing of Small Ribozyme and Riboswitch Crystal Structures.


RNA Structure Determination Methods and Protocols Methods in Molecular Biology

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    A Hardback by Douglas H. Turner, David H. Mathews

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      Book details

      Publisher Springer New York
      Published 9/24/2016 12:00:00 AM
      ISBN-13 9781493964314
      978-1493964314
      ISBN-10 1493964313
      Also in:
      Medical genetics

      Description



      Table of Contents

      Crumple: An Efficient Tool to Explore thoroughly the RNA Folding Landscape.- Secondary Structure Prediction of Single Sequences using RNAstructure.- Prediction of Secondary Structures Conserved in Multiple RNA Sequences.- Predicting RNA-RNA Interactions Using RNAstructure.- A Method to Predict the Structure and Stability of RNA/RNA Complexes.- STarMir Tools for Prediction of microRNA Binding Sites.- Traditional Chemical Mapping of RNA Structure in vitro and in vivo.- High-throughput Nuclease Probing of RNA Structures using FragSeq.- Mapping RNA Structure in vitro with SHAPE Chemistry and Next Generation Sequencing (SHAPE-Seq).- Experiment-assisted Secondary Structure Prediction with RNAstructure.- RNA Secondary Structure Determination by NMR.- Modeling Small Non-canonical RNA Motifs with the Rosetta FARFAR Server.- Automated RNA 3D Structure Prediction with RNAComposer.- RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS.- Exploring Alternative RNA Structure Sets using MC-FLashfold and db2cm.- NMR Methods for Characterization of RNA Secondary Structure.- The Quick and the Dead: A Guide to Fast Phasing of Small Ribozyme and Riboswitch Crystal Structures.


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