Description
Book SynopsisPrinciples of Biophysical Inquiry.- Introduction: To the Student First Edition.- Philosophy and Practice of Biophysical Study.- Overview of the Biological System Under Study.- Physical Thoughts, Biological Systems The Application of Modeling Principles to Understanding Biological Systems.- Probability and Statistics.- Foundations.- Energy and Force The Prime Observables.- Biophysical Forces in Molecular Systems.- Physical Principles: Quantum Mechanics.- Chemical Principles.- Measuring the Energy of a System: Energetics and the First Law of Thermodynamics.- Entropy and the Second Law of Thermodynamics.- Which Way Is That System Going? The Gibbs Free Energy.- The Thermodynamics of Phase Equilibria.- Building a Model of Biomolecular Structure.- Water: A Unique Solvent and Vital Component of Life.- IonSolvent Interactions.- IonIon Interactions.- Lipids in Aqueous Solution.- Macromolecules in Solution.- Molecular Modeling Mapping Biochemical State Space.- The Electrified Interphase.- Function and Action Biological State Space.- Transport A Non-equilibrium Process.- Flow in a Chemical Potential Field: Diffusion.- Flow in an Electric Field: Conduction.- Forces Across Membranes.- Kinetics Chemical Kinetics.- Dynamic Bioelectrochemistry Charge Transfer in Biological Systems.- Methods for the Measuring Structure and Function.- Separation and Characterization of Biomolecules Based on Macroscopic Properties.- Analysis of Molecular Structure with Electronic Spectroscopy.- Molecular Structure from Scattering Phenomena.- Analysis of Structure Microscopy.- Epilogue.- Physical Constants.
Table of ContentsPREFACE PART I: Principles of Biophysical Inquiry Chapter 1 Introduction: “To the Student” Chapter 2 Philosophy and Practice of Biophysical Study Chapter 3 Overview of the Biological System Under Study – Descriptive Models Chapter 4 Physical Thoughts, Biological Systems - The application of modeling principles to understanding biological systems Chapter 5 Probability and Statistics PART II: Foundations Chapter 6 Physical Principles: Energy - The Prime Observable Chapter 7 Biophysical Forces in Molecular Systems Chapter 8 An Introduction to Quantum Mechanics Chapter 9 Chemical Principles Chapter 10 Measuring the Energy of a System: Energetics and the First Law of Thermodynamics Chapter 11 Entropy and the Second Law of Thermodynamics Chapter 12 Which Way Did That System Go? The Gibbs Free Energy Chapter 13 The Thermodynamics of Phase Equilibria PART III: Building a Model of Biomolecular Structure Chapter 14 Water: A Unique Structure, A Unique Solvent Chapter 15 Ion-Solvent Interactions Chapter 16 Ion-Ion Interactions Chapter 17 Lipids in Aqueous Solution Chapter 18 Macromolecules in Solution Chapter 19 Molecular Modeling - Mapping Biochemical State Space Chapter 20 The Electrified Interphase PART IV: Function and Action Biological State Space Chapter 21 Transport and Kinetics: Processes Not at Equilibrium Chapter 22 Flow in a Chemical Potential Field: Diffusion Chapter 23 Flow in an Electrical Field: Conduction Chapter 24 Forces Across Membranes Chapter 25 Kinetics - Chemical Kinetics Chapter 26 Bioelectrochemistry – Charge Transfer in Biological Systems PART V: Methods for the Measuring Structure and Function Chapter 27 Separation and Characterization of Biomolecules Based on Macroscopic Properties (with Kristin E. Bergethon) Chapter 28 Determining Structure by molecular interactions with photons: Electronic Spectroscopy (with Kristin Bergethon) Chapter 29 Determining Structure by molecular interactions with photons: ScatteringPhenomena Chapter 30 Analysis of Structure – Microscopy Chapter 31 Epilogue Chapter 32 Physical Constants PART VI: APPENDICES Appendix A Review of Mathematical Methods Appendix B Quantum Electrodynamics Appendix C The Pre-Socratic Roots of Modern Science Appendix D The Poisson Function Appendix E Assumptions of a Kinetic Theory of Ideal Gas Behavior Appendix F Determination of a Field from the Potential Appendix G Geometric Optics Appendix H The Compton Effect Appendix I Hamilton's Principle of Least Action/Fermat's Principle of Least Time Appendix J Energy of Interaction between ions Appendix K Derivation of the Statement, Qrev > Qirrev Appendix L Derivation of the Clausius-Clapeyron Equation Appendix M Derivation of the van't Hoff Equation for Osmotic Pressure Appendix N Pseudoforces Appendix O Work of charging and discharging a rigid sphere Appendix P Review of Electrical Circuits Appendix Q Fermi's Golden Rule Appendix R Adiabatic vs non-Adiabatic processes
