Description

Book Synopsis

Metallofoldamers are oligomers that fold into three-dimensional structures in a controlled manner upon coordination with metal ions. Molecules in this class have shown an impressive ability to form single-handed helical structures and other three-dimensional architectures. Several metallofoldamers have been applied as sensors due to their selective folding when binding to a specific metal ion, while others show promise for applications as responsive materials on the basis of their ability to fold and unfold upon changes in the oxidation state of the coordinated metal ion, and as novel catalysts.

Metallofoldamers: From Helicates to Biomimetic Architectures describes the variety of interactions between oligomers and metal species, with a focus on non-natural synthetic molecules.

Topics covered include:

  • the major classes of foldamers and their folding driving force
  • metalloproteins and metalloenzymes
  • helicates: self-assembly, st

    Trade Review

    “Overall, the book is an interesting read and a useful reference for the chemistry of helicates and for those interested in metallosupramolecular chemistry more generally.” (Applied Organometallic Chemistry, 31 October 2014)



    Table of Contents

    List of Contributors xi

    Foreword xiii

    Preface xv

    1 Metalloproteins and Metallopeptides – Natural Metallofoldamers 1
    Vasiliki Lykourinou and Li-June Ming

    1.1 Introduction 1

    1.2 Metalloproteins 2

    1.3 Metallopeptides 12

    1.4 Conclusion and Perspectives 28

    Acknowledgements 30

    References 30

    2 Introduction to Unnatural Foldamers 51
    Claudia Tomasini and Nicola Castellucci

    2.1 General Definition of Foldamers 51

    2.2 Biotic Foldamers 53

    2.3 Abiotic Foldamers 70

    2.4 Organization Induced by External Agents 72

    2.5 Applications 78

    2.6 Conclusions and Outlook 81

    References 81

    3 Self-Assembly Principles of Helicates 91
    Josef Hamacek

    3.1 Introduction 91

    3.2 Thermodynamic Considerations in Self-Assembly 93

    3.3 Cooperativity in Self-Assembly 100

    3.4 Kinetic Aspects of Multicomponent Organization 104

    3.5 Understanding Self-Assembly Processes 108

    3.6 Secondary Structure and Stabilizing Interactions 118

    3.7 Conclusions 118

    References 120

    4 Structural Aspects of Helicates 125
    Martin Berg and Arne Lützen

    4.1 Introduction 125

    4.2 Structural Dynamics 127

    4.3 Template Effects 129

    4.4 Sequence Selectivity 130

    4.5 Self-Sorting Effects in Helicate Formation 135

    4.6 Diastereoselectivity I – “Meso”-Helicate versus Helicate Formation 138

    4.7 Diastereoselectivity II – Enantiomerically Pure Helicates from Chiral Ligands 139

    4.8 Summary and Outlook 150

    References 151

    5 Helical Structures Featuring Thiolato Donors 159
    F. Ekkehardt Hahn and Dennis Lewing

    5.1 Introduction 159

    5.2 Coordination Chemistry of Bis- and Tris(Benzene-o-Dithiolato) Ligands 162

    5.3 Coordination Chemistry of Mixed Bis(Benzene-o-Dithiol)/Catechol Ligands 176

    5.4 Subcomponent Self-Assembly Reactions 181

    5.5 Summary and Outlook 186

    References 186

    6 Photophysical Properties and Applications of Lanthanoid Helicates 193
    Jean-Claude G. Bünzli

    List of Acronyms and Abbreviations 193

    6.1 Introduction 194

    6.2 Homometallic Lanthanoid Helicates 197

    6.3 Heterometallic d-f Helicates 223

    6.4 Chiral Helicates 236

    6.5 Extended Helical Structures 239

    6.6 Perspectives 240

    Acknowledgements 241

    References 241

    7 Design of Supramolecular Materials: Liquid-Crystalline Helicates 249
    Raymond Ziessel

    7.1 Introduction 249

    7.2 Imino-Bipyridine and Imino-Phenanthroline Helicates 252

    7.2.1 Liquid Crystals from Imino-Polypyridine Based Helicates 257

    7.3 Conclusions 266

    7.4 Outlook and Perspectives 267

    Acknowledgements 268

    References 268

    8 Helicates, Peptide-Helicates and Metal-Assisted Stabilization of Peptide Microstructures 275
    Markus Albrecht

    8.1 Introduction 275

    8.2 Selected Examples of Metal Peptide Conjugates 276

    8.3 Helicates and Peptide-Helicates 279

    8.4 Metal-Assisted Stabilization of Peptide Microstructures 288

    8.5 Conclusion 298

    References 300

    9 Artificial DNA Directed toward Synthetic Metallofoldamers 303
    Guido H. Clever and Mitsuhiko Shionoya

    9.1 Introduction 303

    9.2 The Quest for Alternative Base Pairing Systems 309

    9.3 Design and Synthesis of Metal Base Pairs 311

    9.4 Assembly and Analysis of Metal Base Pairs Inside the DNA Double Helix 315

    9.5 Artificial DNA for Synthetic Metallofoldamers 318

    9.6 Functions, Applications and Future Directions 324

    References 327

    10 Metal Complexes as Alternative Base Pairs or Triplets in Natural and Synthetic Nucleic Acid Structures 333
    Arnie De Leon, Jing Kong, and Catalina Achim

    10.1 Introduction 333

    10.2 Brief Overview of Synthetic Analogues of DNA: PNA, LNA, UNA, and GNA 338

    10.3 Metal-Containing, Ligand-Modified Nucleic Acid Duplexes 340

    10.4 Duplexes Containing Multiple Metal Complexes 361

    10.5 Metal-Containing, Ligand-Modified Nucleic Acid Triplexes 367

    10.6 Summary and Outlook 367

    Acknowledgement 369

    Abbreviations 369

    References 370

    11 Interaction of Biomimetic Oligomers with Metal Ions 379
    Galia Maayan

    11.1 Introduction 380

    11.2 Single-Stranded Oligomers in Which Metal Coordination Templates, or Templates and Nucleates the Formation of an Abiotic Helix 381

    11.3 Folded Oligomers in Which Metal Coordination Nucleates the Formation of an Abiotic Single-Stranded Helix 384

    11.4 Folded Oligomers in Which Metal Coordination Enhances Secondary Structure and Leads to Higher-Order Architectures 393

    11.5 Concluding Remarks 402

    References 402

    12 Applications of Metallofoldamers 407
    Yan Zhao

    12.1 Introduction 407

    12.2 Metallofoldamers in Molecular Recognition 409

    12.3 Metallofoldamers as Sensors for Metal Ions 414

    12.4 Metallofoldamers as Dynamic Materials 419

    12.5 Conclusions and Outlook 429

    References 430

    Index 433

Metallofoldamers

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    A Hardback by Galia Maayan, Markus Albrecht

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      View other formats and editions of Metallofoldamers by Galia Maayan

      Publisher: John Wiley & Sons Inc
      Publication Date: 08/03/2013
      ISBN13: 9780470973233, 978-0470973233
      ISBN10: 0470973234
      Also in:
      Chemistry

      Description

      Book Synopsis

      Metallofoldamers are oligomers that fold into three-dimensional structures in a controlled manner upon coordination with metal ions. Molecules in this class have shown an impressive ability to form single-handed helical structures and other three-dimensional architectures. Several metallofoldamers have been applied as sensors due to their selective folding when binding to a specific metal ion, while others show promise for applications as responsive materials on the basis of their ability to fold and unfold upon changes in the oxidation state of the coordinated metal ion, and as novel catalysts.

      Metallofoldamers: From Helicates to Biomimetic Architectures describes the variety of interactions between oligomers and metal species, with a focus on non-natural synthetic molecules.

      Topics covered include:

      • the major classes of foldamers and their folding driving force
      • metalloproteins and metalloenzymes
      • helicates: self-assembly, st

        Trade Review

        “Overall, the book is an interesting read and a useful reference for the chemistry of helicates and for those interested in metallosupramolecular chemistry more generally.” (Applied Organometallic Chemistry, 31 October 2014)



        Table of Contents

        List of Contributors xi

        Foreword xiii

        Preface xv

        1 Metalloproteins and Metallopeptides – Natural Metallofoldamers 1
        Vasiliki Lykourinou and Li-June Ming

        1.1 Introduction 1

        1.2 Metalloproteins 2

        1.3 Metallopeptides 12

        1.4 Conclusion and Perspectives 28

        Acknowledgements 30

        References 30

        2 Introduction to Unnatural Foldamers 51
        Claudia Tomasini and Nicola Castellucci

        2.1 General Definition of Foldamers 51

        2.2 Biotic Foldamers 53

        2.3 Abiotic Foldamers 70

        2.4 Organization Induced by External Agents 72

        2.5 Applications 78

        2.6 Conclusions and Outlook 81

        References 81

        3 Self-Assembly Principles of Helicates 91
        Josef Hamacek

        3.1 Introduction 91

        3.2 Thermodynamic Considerations in Self-Assembly 93

        3.3 Cooperativity in Self-Assembly 100

        3.4 Kinetic Aspects of Multicomponent Organization 104

        3.5 Understanding Self-Assembly Processes 108

        3.6 Secondary Structure and Stabilizing Interactions 118

        3.7 Conclusions 118

        References 120

        4 Structural Aspects of Helicates 125
        Martin Berg and Arne Lützen

        4.1 Introduction 125

        4.2 Structural Dynamics 127

        4.3 Template Effects 129

        4.4 Sequence Selectivity 130

        4.5 Self-Sorting Effects in Helicate Formation 135

        4.6 Diastereoselectivity I – “Meso”-Helicate versus Helicate Formation 138

        4.7 Diastereoselectivity II – Enantiomerically Pure Helicates from Chiral Ligands 139

        4.8 Summary and Outlook 150

        References 151

        5 Helical Structures Featuring Thiolato Donors 159
        F. Ekkehardt Hahn and Dennis Lewing

        5.1 Introduction 159

        5.2 Coordination Chemistry of Bis- and Tris(Benzene-o-Dithiolato) Ligands 162

        5.3 Coordination Chemistry of Mixed Bis(Benzene-o-Dithiol)/Catechol Ligands 176

        5.4 Subcomponent Self-Assembly Reactions 181

        5.5 Summary and Outlook 186

        References 186

        6 Photophysical Properties and Applications of Lanthanoid Helicates 193
        Jean-Claude G. Bünzli

        List of Acronyms and Abbreviations 193

        6.1 Introduction 194

        6.2 Homometallic Lanthanoid Helicates 197

        6.3 Heterometallic d-f Helicates 223

        6.4 Chiral Helicates 236

        6.5 Extended Helical Structures 239

        6.6 Perspectives 240

        Acknowledgements 241

        References 241

        7 Design of Supramolecular Materials: Liquid-Crystalline Helicates 249
        Raymond Ziessel

        7.1 Introduction 249

        7.2 Imino-Bipyridine and Imino-Phenanthroline Helicates 252

        7.2.1 Liquid Crystals from Imino-Polypyridine Based Helicates 257

        7.3 Conclusions 266

        7.4 Outlook and Perspectives 267

        Acknowledgements 268

        References 268

        8 Helicates, Peptide-Helicates and Metal-Assisted Stabilization of Peptide Microstructures 275
        Markus Albrecht

        8.1 Introduction 275

        8.2 Selected Examples of Metal Peptide Conjugates 276

        8.3 Helicates and Peptide-Helicates 279

        8.4 Metal-Assisted Stabilization of Peptide Microstructures 288

        8.5 Conclusion 298

        References 300

        9 Artificial DNA Directed toward Synthetic Metallofoldamers 303
        Guido H. Clever and Mitsuhiko Shionoya

        9.1 Introduction 303

        9.2 The Quest for Alternative Base Pairing Systems 309

        9.3 Design and Synthesis of Metal Base Pairs 311

        9.4 Assembly and Analysis of Metal Base Pairs Inside the DNA Double Helix 315

        9.5 Artificial DNA for Synthetic Metallofoldamers 318

        9.6 Functions, Applications and Future Directions 324

        References 327

        10 Metal Complexes as Alternative Base Pairs or Triplets in Natural and Synthetic Nucleic Acid Structures 333
        Arnie De Leon, Jing Kong, and Catalina Achim

        10.1 Introduction 333

        10.2 Brief Overview of Synthetic Analogues of DNA: PNA, LNA, UNA, and GNA 338

        10.3 Metal-Containing, Ligand-Modified Nucleic Acid Duplexes 340

        10.4 Duplexes Containing Multiple Metal Complexes 361

        10.5 Metal-Containing, Ligand-Modified Nucleic Acid Triplexes 367

        10.6 Summary and Outlook 367

        Acknowledgement 369

        Abbreviations 369

        References 370

        11 Interaction of Biomimetic Oligomers with Metal Ions 379
        Galia Maayan

        11.1 Introduction 380

        11.2 Single-Stranded Oligomers in Which Metal Coordination Templates, or Templates and Nucleates the Formation of an Abiotic Helix 381

        11.3 Folded Oligomers in Which Metal Coordination Nucleates the Formation of an Abiotic Single-Stranded Helix 384

        11.4 Folded Oligomers in Which Metal Coordination Enhances Secondary Structure and Leads to Higher-Order Architectures 393

        11.5 Concluding Remarks 402

        References 402

        12 Applications of Metallofoldamers 407
        Yan Zhao

        12.1 Introduction 407

        12.2 Metallofoldamers in Molecular Recognition 409

        12.3 Metallofoldamers as Sensors for Metal Ions 414

        12.4 Metallofoldamers as Dynamic Materials 419

        12.5 Conclusions and Outlook 429

        References 430

        Index 433

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