Description

Book Synopsis
This Third Edition of the critically hailed Clinical Trials builds on the text's reputation as a straightforward and authoritative presentation of statistical methods for clinical trials.

Table of Contents

Preface to the Third Edition xxv

About the Companion Website xxviii

1 Preliminaries 1

1.1 Introduction 1

1.2 Audiences 2

1.3 Scope 3

1.4 Other Sources of Knowledge 5

1.5 Notation and Terminology 6

1.6 Examples, Data, and Programs 9

1.7 Summary 9

2 Clinical Trials as Research 10

2.1 Introduction 10

2.2 Research 13

2.3 Defining Clinical Trials 19

2.4 Practicalities of Usage 29

2.5 Nonexperimental Designs 35

2.6 Summary 41

2.7 Questions for Discussion 41

3 Why Clinical Trials are Ethical 43

3.1 Introduction 43

3.2 Duality 47

3.3 Historically Derived Principles of Ethics 57

3.4 Contemporary Foundational Principles 65

3.5 Methodologic Reflections 72

3.6 Professional Conduct 79

3.7 Summary 85

3.8 Questions for Discussion 86

4 Contexts for Clinical Trials 87

4.1 Introduction 87

4.2 Drugs 91

4.3 Devices 95

4.4 Prevention 99

4.5 Complementary and Alternative Medicine 106

4.6 Surgery and Skill-Dependent Therapies 116

4.7 A Brief View of Some Other Contexts 130

4.8 Summary 135

4.9 Questions for Discussion 136

5 Measurement 137

5.1 Introduction 137

5.2 Objectives 140

5.3 Measurement Design 143

5.4 Surrogate Outcomes 162

5.5 Summary 170

5.6 Questions for Discussion 171

6 Random Error and Bias 172

6.1 Introduction 172

6.2 Clinical Bias 181

6.3 Statistical Bias 188

6.4 Summary 194

6.5 Questions for Discussion 194

7 Statistical Perspectives 196

7.1 Introduction 196

7.2 Differences in Statistical Perspectives 197

7.3 Frequentist 202

7.4 Bayesian 204

7.5 Likelihood 210

7.6 Statistics Issues 212

7.7 Summary 215

7.8 Questions for Discussion 216

8 Experiment Design in Clinical Trials 217

8.1 Introduction 217

8.2 Trials As Simple Experiment Designs 218

8.3 Goals of Experiment Design 223

8.4 Design Concepts 225

8.5 Design Features 230

8.6 Special Design Issues 237

8.7 Importance of the Protocol Document 244

8.8 Summary 252

8.9 Questions for Discussion 253

9 The Trial Cohort 254

9.1 Introduction 254

9.2 Cohort Definition and Selection 255

9.3 Modeling Accrual 264

9.4 Inclusiveness, Representation, and Interactions 267

9.5 Summary 275

9.6 Questions for Discussion 275

10 Development Paradigms 277

10.1 Introduction 277

10.2 Pipeline Principles and Problems 281

10.3 A Simple Quantitative Pipeline 286

10.4 Late Failures 292

10.5 Summary 300

10.6 Questions for Discussion 301

11 Translational Clinical Trials 302

11.1 Introduction 302

11.2 Inferential Paradigms 308

11.3 Evidence and Theory 312

11.4 Translational Trials Defined 313

11.5 Information From Translational Trials 317

11.5.6 Sample Size for Translational Trials 324

11.5.7 Validity 327

11.6 Summary 328

11.7 Questions for Discussion 328

12 Early Development and Dose-Finding 329

12.1 Introduction 329

12.2 Basic Concepts 330

12.3 Essential Concepts for Dose versus Risk 333

12.4 Dose-Ranging 338

12.5 Dose-Finding is Model Based 344

12.6 General Dose-Finding Issues 354

12.7 Summary 366

12.8 Questions for Discussion 368

13 Middle Development 370

13.1 Introduction 370

13.2 Characteristics of Middle Development 372

13.3 Design Issues 375

13.4 Middle Development Distills True Positives 379

13.5 Futility and Nonsuperiority Designs 381

13.6 Dose–Efficacy Questions 385

13.7 Randomized Comparisons 386

13.8 Cohort Mixtures 392

13.9 Summary 395

13.10 Questions for Discussion 396

14 Comparative Trials 397

14.1 Introduction 397

14.2 Elements of Reliability 398

14.3 Biomarker-Based Comparative Designs 402

14.4 Some Special Comparative Designs 408

14.5 Summary 411

14.6 Questions for Discussion 412

15 Adaptive Design Features 413

15.1 Introduction 413

15.2 Some Familiar Adaptations 418

15.3 Biomarker Adaptive Trials 423

15.4 Re-Designs 425

15.5 Seamless Designs 427

15.6 Barriers to the Use of AD 428

15.7 Adaptive Design Case Study 428

15.8 Summary 429

15.9 Questions for Discussion 429

16 Sample Size and Power 430

16.1 Introduction 430

16.2 Principles 431

16.3 Early Developmental Trials 436

16.4 Simple Estimation Designs 438

16.5 Event Rates 451

16.6 Staged Studies 455

16.7 Comparative Trials 457

16.8 Expanded Safety Trials 478

16.9 Other Considerations 481

16.10 Summary 489

16.11 Questions for Discussion 490

17 Treatment Allocation 492

17.1 Introduction 492

17.2 Randomization 494

17.3 Constrained Randomization 500

17.4 Adaptive Allocation 504

17.5 Other Issues Regarding Randomization 507

17.6 Unequal Treatment Allocation 514

17.7 Randomization Before Consent 519

17.8 Summary 520

17.9 Questions for Discussion 520

18 Treatment Effects Monitoring 522

18.1 Introduction 522

18.2 Administrative Issues in Trial Monitoring 527

18.3 Organizational Issues Related to Monitoring 537

18.4 Statistical Methods for Monitoring 545

18.5 Summary 570

18.6 Questions for Discussion 572

19 Counting Subjects and Events 573

19.1 Introduction 573

19.2 Imperfection and Validity 574

19.3 Treatment Nonadherence 575

19.4 Protocol Nonadherence 580

19.5 Data Imperfections 583

19.6 Summary 588

19.7 Questions for Discussion 589

20 Estimating Clinical Effects 590

20.1 Introduction 590

20.2 Dose-Finding and Pharmacokinetic Trials 594

20.3 Middle Development Studies 599

20.4 Randomized Comparative Trials 606

20.5 Problems With P-Values 616

20.6 Strength of Evidence Through Support Intervals 620

20.7 Special Methods of Analysis 622

20.8 Exploratory Analyses 628

20.9 Summary 639

20.10 Questions for Discussion 640

21 Prognostic Factor Analyses 644

21.1 Introduction 644

21.2 Model-Based Methods 647

21.3 Adjusted Analyses of Comparative Trials 661

21.4 PFAS Without Models 666

21.5 Summary 669

21.6 Questions for Discussion 669

22 Factorial Designs 671

22.1 Introduction 671

22.2 Characteristics of Factorial Designs 672

22.3 Treatment Interactions 675

22.4 Examples of Factorial Designs 680

22.5 Partial Fractional and Incomplete Factorials 682

22.6 Summary 683

22.7 Questions for Discussion 683

23 Crossover Designs 684

23.1 Introduction 684

23.2 Advantages and Disadvantages 686

23.3 Analysis 691

23.4 Classic Case Study 696

23.5 Summary 696

23.6 Questions for Discussion 697

24 Meta-Analyses 698

24.1 Introduction 698

24.2 A Sketch of Meta-Analysis Methods 700

24.3 Other Issues 705

24.4 Summary 707

24.5 Questions for Discussion 708

25 Reporting and Authorship 709

25.1 Introduction 709

25.2 General Issues in Reporting 710

25.3 Clinical Trial Reports 715

25.4 Authorship 726

25.5 Other Issues in Disseminating Results 731

25.6 Summary 732

25.7 Questions for Discussion 733

26 Misconduct and Fraud in Clinical Research 734

26.1 Introduction 734

26.2 Research Practices 741

26.3 Approach to Allegations of Misconduct 743

26.4 Characteristics of Some Misconduct Cases 747

26.5 Lessons 754

26.6 Clinical Investigators’ Responsibilities 757

26.7 Summary 759

26.8 Questions for Discussion 760

Appendix A Data and Programs 761

A.1 Introduction 761

A.2 Design Programs 761

A.3 Mathematica Code 763

Appendix B Abbreviations 764

Appendix C Notation and Terminology 769

C.1 Introduction 769

C.2 Notation 769

C.3 Terminology and Concepts 772

Appendix D Nuremberg Code 788

D.1 Permissible Medical Experiments 788

References 790

Index 871

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      Description

      Book Synopsis
      This Third Edition of the critically hailed Clinical Trials builds on the text's reputation as a straightforward and authoritative presentation of statistical methods for clinical trials.

      Table of Contents

      Preface to the Third Edition xxv

      About the Companion Website xxviii

      1 Preliminaries 1

      1.1 Introduction 1

      1.2 Audiences 2

      1.3 Scope 3

      1.4 Other Sources of Knowledge 5

      1.5 Notation and Terminology 6

      1.6 Examples, Data, and Programs 9

      1.7 Summary 9

      2 Clinical Trials as Research 10

      2.1 Introduction 10

      2.2 Research 13

      2.3 Defining Clinical Trials 19

      2.4 Practicalities of Usage 29

      2.5 Nonexperimental Designs 35

      2.6 Summary 41

      2.7 Questions for Discussion 41

      3 Why Clinical Trials are Ethical 43

      3.1 Introduction 43

      3.2 Duality 47

      3.3 Historically Derived Principles of Ethics 57

      3.4 Contemporary Foundational Principles 65

      3.5 Methodologic Reflections 72

      3.6 Professional Conduct 79

      3.7 Summary 85

      3.8 Questions for Discussion 86

      4 Contexts for Clinical Trials 87

      4.1 Introduction 87

      4.2 Drugs 91

      4.3 Devices 95

      4.4 Prevention 99

      4.5 Complementary and Alternative Medicine 106

      4.6 Surgery and Skill-Dependent Therapies 116

      4.7 A Brief View of Some Other Contexts 130

      4.8 Summary 135

      4.9 Questions for Discussion 136

      5 Measurement 137

      5.1 Introduction 137

      5.2 Objectives 140

      5.3 Measurement Design 143

      5.4 Surrogate Outcomes 162

      5.5 Summary 170

      5.6 Questions for Discussion 171

      6 Random Error and Bias 172

      6.1 Introduction 172

      6.2 Clinical Bias 181

      6.3 Statistical Bias 188

      6.4 Summary 194

      6.5 Questions for Discussion 194

      7 Statistical Perspectives 196

      7.1 Introduction 196

      7.2 Differences in Statistical Perspectives 197

      7.3 Frequentist 202

      7.4 Bayesian 204

      7.5 Likelihood 210

      7.6 Statistics Issues 212

      7.7 Summary 215

      7.8 Questions for Discussion 216

      8 Experiment Design in Clinical Trials 217

      8.1 Introduction 217

      8.2 Trials As Simple Experiment Designs 218

      8.3 Goals of Experiment Design 223

      8.4 Design Concepts 225

      8.5 Design Features 230

      8.6 Special Design Issues 237

      8.7 Importance of the Protocol Document 244

      8.8 Summary 252

      8.9 Questions for Discussion 253

      9 The Trial Cohort 254

      9.1 Introduction 254

      9.2 Cohort Definition and Selection 255

      9.3 Modeling Accrual 264

      9.4 Inclusiveness, Representation, and Interactions 267

      9.5 Summary 275

      9.6 Questions for Discussion 275

      10 Development Paradigms 277

      10.1 Introduction 277

      10.2 Pipeline Principles and Problems 281

      10.3 A Simple Quantitative Pipeline 286

      10.4 Late Failures 292

      10.5 Summary 300

      10.6 Questions for Discussion 301

      11 Translational Clinical Trials 302

      11.1 Introduction 302

      11.2 Inferential Paradigms 308

      11.3 Evidence and Theory 312

      11.4 Translational Trials Defined 313

      11.5 Information From Translational Trials 317

      11.5.6 Sample Size for Translational Trials 324

      11.5.7 Validity 327

      11.6 Summary 328

      11.7 Questions for Discussion 328

      12 Early Development and Dose-Finding 329

      12.1 Introduction 329

      12.2 Basic Concepts 330

      12.3 Essential Concepts for Dose versus Risk 333

      12.4 Dose-Ranging 338

      12.5 Dose-Finding is Model Based 344

      12.6 General Dose-Finding Issues 354

      12.7 Summary 366

      12.8 Questions for Discussion 368

      13 Middle Development 370

      13.1 Introduction 370

      13.2 Characteristics of Middle Development 372

      13.3 Design Issues 375

      13.4 Middle Development Distills True Positives 379

      13.5 Futility and Nonsuperiority Designs 381

      13.6 Dose–Efficacy Questions 385

      13.7 Randomized Comparisons 386

      13.8 Cohort Mixtures 392

      13.9 Summary 395

      13.10 Questions for Discussion 396

      14 Comparative Trials 397

      14.1 Introduction 397

      14.2 Elements of Reliability 398

      14.3 Biomarker-Based Comparative Designs 402

      14.4 Some Special Comparative Designs 408

      14.5 Summary 411

      14.6 Questions for Discussion 412

      15 Adaptive Design Features 413

      15.1 Introduction 413

      15.2 Some Familiar Adaptations 418

      15.3 Biomarker Adaptive Trials 423

      15.4 Re-Designs 425

      15.5 Seamless Designs 427

      15.6 Barriers to the Use of AD 428

      15.7 Adaptive Design Case Study 428

      15.8 Summary 429

      15.9 Questions for Discussion 429

      16 Sample Size and Power 430

      16.1 Introduction 430

      16.2 Principles 431

      16.3 Early Developmental Trials 436

      16.4 Simple Estimation Designs 438

      16.5 Event Rates 451

      16.6 Staged Studies 455

      16.7 Comparative Trials 457

      16.8 Expanded Safety Trials 478

      16.9 Other Considerations 481

      16.10 Summary 489

      16.11 Questions for Discussion 490

      17 Treatment Allocation 492

      17.1 Introduction 492

      17.2 Randomization 494

      17.3 Constrained Randomization 500

      17.4 Adaptive Allocation 504

      17.5 Other Issues Regarding Randomization 507

      17.6 Unequal Treatment Allocation 514

      17.7 Randomization Before Consent 519

      17.8 Summary 520

      17.9 Questions for Discussion 520

      18 Treatment Effects Monitoring 522

      18.1 Introduction 522

      18.2 Administrative Issues in Trial Monitoring 527

      18.3 Organizational Issues Related to Monitoring 537

      18.4 Statistical Methods for Monitoring 545

      18.5 Summary 570

      18.6 Questions for Discussion 572

      19 Counting Subjects and Events 573

      19.1 Introduction 573

      19.2 Imperfection and Validity 574

      19.3 Treatment Nonadherence 575

      19.4 Protocol Nonadherence 580

      19.5 Data Imperfections 583

      19.6 Summary 588

      19.7 Questions for Discussion 589

      20 Estimating Clinical Effects 590

      20.1 Introduction 590

      20.2 Dose-Finding and Pharmacokinetic Trials 594

      20.3 Middle Development Studies 599

      20.4 Randomized Comparative Trials 606

      20.5 Problems With P-Values 616

      20.6 Strength of Evidence Through Support Intervals 620

      20.7 Special Methods of Analysis 622

      20.8 Exploratory Analyses 628

      20.9 Summary 639

      20.10 Questions for Discussion 640

      21 Prognostic Factor Analyses 644

      21.1 Introduction 644

      21.2 Model-Based Methods 647

      21.3 Adjusted Analyses of Comparative Trials 661

      21.4 PFAS Without Models 666

      21.5 Summary 669

      21.6 Questions for Discussion 669

      22 Factorial Designs 671

      22.1 Introduction 671

      22.2 Characteristics of Factorial Designs 672

      22.3 Treatment Interactions 675

      22.4 Examples of Factorial Designs 680

      22.5 Partial Fractional and Incomplete Factorials 682

      22.6 Summary 683

      22.7 Questions for Discussion 683

      23 Crossover Designs 684

      23.1 Introduction 684

      23.2 Advantages and Disadvantages 686

      23.3 Analysis 691

      23.4 Classic Case Study 696

      23.5 Summary 696

      23.6 Questions for Discussion 697

      24 Meta-Analyses 698

      24.1 Introduction 698

      24.2 A Sketch of Meta-Analysis Methods 700

      24.3 Other Issues 705

      24.4 Summary 707

      24.5 Questions for Discussion 708

      25 Reporting and Authorship 709

      25.1 Introduction 709

      25.2 General Issues in Reporting 710

      25.3 Clinical Trial Reports 715

      25.4 Authorship 726

      25.5 Other Issues in Disseminating Results 731

      25.6 Summary 732

      25.7 Questions for Discussion 733

      26 Misconduct and Fraud in Clinical Research 734

      26.1 Introduction 734

      26.2 Research Practices 741

      26.3 Approach to Allegations of Misconduct 743

      26.4 Characteristics of Some Misconduct Cases 747

      26.5 Lessons 754

      26.6 Clinical Investigators’ Responsibilities 757

      26.7 Summary 759

      26.8 Questions for Discussion 760

      Appendix A Data and Programs 761

      A.1 Introduction 761

      A.2 Design Programs 761

      A.3 Mathematica Code 763

      Appendix B Abbreviations 764

      Appendix C Notation and Terminology 769

      C.1 Introduction 769

      C.2 Notation 769

      C.3 Terminology and Concepts 772

      Appendix D Nuremberg Code 788

      D.1 Permissible Medical Experiments 788

      References 790

      Index 871

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